200x Filetype PPTX File size 0.05 MB Source: jncollegeonline.co.in
A database is a vast collection of data pertaining to a specific topic, e.g., nucleotide sequence, protein sequence, etc. in an electronic environment. Databases are at the heart of bioinformatics. There is a very large number of databases, which is growing rapidly. The biological information can be stored in different databases. Each database has its own website with unique navigation tools. The biological databases are, in general, publicly accessible. Types of databases: 3 types on the basis of source. Primary databases: Primary databases contain original biological data. They are archives of raw sequence or structural data submitted by the scientific community. It can also be called an archival database since it archives the experimental results submitted by the scientists. The primary database is populated with experimentally derived data like genome sequence, macromolecular structure, etc. The data are given accession numbers when they are entered into the database. The same data can later be retrieved using the accession number. Accession number identifies each data uniquely and it never changes. Examples – Nucleotide sequence: European Molecular Biology Laboratory (EMBL) database, GenBank and DDBJ Protein Databases are: PDB, PIR, Metacyc, etc. GenBank GenBank is physically located in the USA and is accessible through the NCBI portal over the intern. The GenBank sequence database is open access, annotated collection of all publicly available nucleotide sequences and their protein translations. This database is produced and maintained by the National Center for Biotechnology Information (NCBI) as part of the International Nucleotide Sequence Database Collaboration (INSDC). GenBank has become an important database for research in biological fields and has grown in recent years at an exponential rate by doubling roughly every 18 months. EMBL (European Molecular Biology Laboratory) EMBL (European Molecular Biology Laboratory) is in UK. The European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database is a comprehensive collection of primary nucleotide sequences maintained at the European Bioinformatics Institute (EBI). Data are received from genome sequencing centers, individual scientists and patent offices.
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